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| Registros recuperados : 8 | |
| 1. |  | LUCENA, W. A.; PELEGRINI, P. B.; MARTINS-DE-SA, D.; FONSECA, F. C. A.; GOMES JÚNIOR, J. E.; MACEDO, L. L. P. de; SILVA, M. C. M. da; OLIVEIRA, R. D.; GROSSI DE SA, M. F. Molecular approaches to improve the insecticidal activity of Bacillus thuringiensis cry toxins. Toxins, v. 6, p. 2393-2423, 2014.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 2. | | RIBEIRO, T. P.; MARTINS-DE-SA, D.; MACEDO, L. L. P. de; LOURENCO, I. T.; RUFFO, G. C.; SOUSA, J. P. A.; SANTANA, J. M. do R.; OLIVEIRA-NETO, O. B.; MOURA, S. M.; SILVA, M. C. M. da; MORGANTE, C. V.; OLIVEIRA, N. G. de; BASSO, M. F.; SA, M. F. G. de. Cotton plants overexpressing the Bacillus thuringiensis Cry23Aa and Cry37Aa binary-like toxins exhibit high resistance to the cotton boll weevil (Anthonomus grandis). Plant Science, v. 344, 112079, 2024. Na publicação: Leonardo Lima Pepino Macedo; Isabela Tristan Lourenço-Tessutti; Maria Cristina Mattar Silva; Maria Fatima Grossi-de-Sa.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 3. | | LOURENCO, I. T.; SOUZA JÚNIOR, J. D. A.; MARTINS-DE-SA, D.; VIANA, A. A. B.; CARNEIRO, R. M. D. G.; TOGAWA, R. C.; ALMEIDA-ENGLER, J. de; BATISTA, J. A. N.; SILVA, M. C. M. da; FRAGOSO, R. da R.; SA, M. F. G. de. Knock-down of heat-shock protein 90 and isocitrate lyase gene expression reduced root-knot nematode reproduction. Phytopathology, v. 105, n. 5, p. 628-637, 2015.| Biblioteca(s): Embrapa Cerrados. |
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| 4. | | LOURENCO, I. T.; SOUZA JÚNIOR, J. D. A.; MARTINS-DE-SA, D.; VIANA, A. A. B.; CARNEIRO, R. M. D. G.; TOGAWA, R. C.; ALMEIDA-ENGLER, J. de; BATISTA, J. A. N.; SILVA, M. C. M. da; GROSSI-DE-SA, M. F. Knock-down of heat-shock protein 90 and isocitrate lyase gene expression reduced root-knot nematode reproduction. Phytopathology, v. 105, n. 5, p. 628-637, 2015.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 5. | | ARRAES, F. B. M.; MARTINS-DE-SA, D; VASQUEZ, D. D. N.; MELO, B. P.; FAHEEM, M.; MACEDO, L. L. P. de; MORGANTE, C. V.; BARBOSA, J. A. R. G.; TOGAWA, R. C.; MOREIRA, V. J. V.; DANCHIN, E. G. J.; SA, M. F. G. de. Dissecting protein domain variability in the core rna interference machinery of five insect orders. RNA Biology, v. 18, n. 11, p. 1653-1681, 2021.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia; Embrapa Semiárido. |
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| 6. | | FAHEEM, M.; MARTINS-DE-SÁ, D.; VIDAL, J. F. D.; ÁLVARES, A. C. M.; BRANDÃO-NETO, J.; BIRD, L. E.; TULLY, M. D.; DELFT, F. v.; SOUTO, B. de M.; QUIRINO, B. F.; FREITA, S. M.; BARBOSA, J. A. R. G. Functional and structural characterization of a novel putative cysteine protease cell wall-modifying multi-domain enzyme selected from a microbial metagenome. Scientific Reports, v. 6, n. 38031, 2016. p. 1-14.| Biblioteca(s): Embrapa Agroenergia. |
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| 7. | | FIRMINO, A. A. P.; PINHEIRO, D. H.; MOREIRA-PINTO, C. E.; ANTONINO, J. D.; MACEDO, L. L. P.; MARTINS-DE-SA, D.; ARRAES, F. B. M.; COELHO, R. R.; FONSECA, F. C. de A.; SILVA, M. C. M.; ENGLER, J. de A.; SILVA, M. S.; LOURENÇO-TESSUTTI, I. T.; TERRA, W. R.; GROSSI-DE-SA, M. F. RNAi-mediated suppression of Laccase2 impairs cuticle tanning and molting in the cotton boll weevil (Anthonomus grandis). Frontiers in Physiology, v. 11, article 591569, 2020.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 8. | | MOREIRA, V. J. V.; LOURENCO, I. T.; BASSO, M. F.; LISEI-DE-SA, M. E.; MORGANTE, C. V.; PAES-DE-MELO, B.; ARRAES, F. B. M.; MARTINS-DE-SA, D.; SILVA, M. C. M. da; ENGLER, J. de A.; SA, M. F. G. de. Minc03328 effector gene downregulation severely affects Meloidogyne incognita parasitism in transgenic Arabidopsis thaliana. Planta, v. 255,44, 2022. Na publicação: Isabela Tristan Lourenço-Tessutti; Maria Cristina Mattar Silva; Maria Fatima Grossi-de-Sa.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| Registros recuperados : 8 | |
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Registro Completo
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Biblioteca(s): |
Embrapa Recursos Genéticos e Biotecnologia; Embrapa Semiárido. |
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Data corrente: |
19/02/2021 |
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Data da última atualização: |
07/02/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 2 |
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Autoria: |
ARRAES, F. B. M.; MARTINS-DE-SA, D; VASQUEZ, D. D. N.; MELO, B. P.; FAHEEM, M.; MACEDO, L. L. P. de; MORGANTE, C. V.; BARBOSA, J. A. R. G.; TOGAWA, R. C.; MOREIRA, V. J. V.; DANCHIN, E. G. J.; SA, M. F. G. de. |
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Afiliação: |
FABRICIO BARBOSA MONTEIRO ARRAES; DIOGO MARTINS-DE-SA; DANIEL D. NORIEGA VASQUEZ; BRUNO PAES MELO; MUHAMMAD FAHEEM; LEONARDO LIMA PEPINO DE MACEDO; CAROLINA VIANNA MORGANTE, CPATSA; JOÃO ALEXANDRE R. G. BARBOSA; ROBERTO COITI TOGAWA; VALDEIR JUNIO VAZ MOREIRA; ETIENNE G. J. DANCHIN; MARIA FATIMA GROSSI DE SA. |
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Título: |
Dissecting protein domain variability in the core rna interference machinery of five insect orders. |
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Ano de publicação: |
2021 |
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Fonte/Imprenta: |
RNA Biology, v. 18, n. 11, p. 1653-1681, 2021. |
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DOI: |
https://doi.org/10.1080/15476286.2020.1861816 |
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Idioma: |
Inglês |
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Conteúdo: |
RNA interference (RNAi)-mediated gene silencing can be used to control specific insect pest populations. Unfortunately, the variable efficiency in the knockdown levels of target genes has narrowed the applicability of this technology to a few species. Here, we examine the current state of knowledge regarding the miRNA (micro RNA) and siRNA (small interfering RNA) pathways in insects and investigate the structural variability at key protein domains of the RNAi machinery. Our goal was to correlate domain variability with mechanisms affecting the gene silencing efficiency. To this end, the protein domains of 168 insect species, encompassing the orders Coleoptera, Diptera, Hemiptera, Hymenoptera, and Lepidoptera, were analysed using our pipeline, which takes advantage of meticulous structure-based sequence alignments. We used phylogenetic inference and the evolutionary rate coefficient (K) to outline the variability across domain regions and surfaces. Our results show that four domains, namely dsrm, Helicase, PAZ and Ribonuclease III, are the main contributors of protein variability in the RNAi machinery across different insect orders. We discuss the potential roles of these domains in regulating RNAi-mediated gene silencing and the role of loop regions in fine-tuning RNAi efficiency. Additionally, we identified several order-specific singularities which indicate that lepidopterans have evolved differently from other insect orders, possibly due to constant coevolution with plants and viruses. In conclusion, our results highlight several variability hotspots that deserve further investigation in order to improve the application of RNAi technology in the control of insect pests. MenosRNA interference (RNAi)-mediated gene silencing can be used to control specific insect pest populations. Unfortunately, the variable efficiency in the knockdown levels of target genes has narrowed the applicability of this technology to a few species. Here, we examine the current state of knowledge regarding the miRNA (micro RNA) and siRNA (small interfering RNA) pathways in insects and investigate the structural variability at key protein domains of the RNAi machinery. Our goal was to correlate domain variability with mechanisms affecting the gene silencing efficiency. To this end, the protein domains of 168 insect species, encompassing the orders Coleoptera, Diptera, Hemiptera, Hymenoptera, and Lepidoptera, were analysed using our pipeline, which takes advantage of meticulous structure-based sequence alignments. We used phylogenetic inference and the evolutionary rate coefficient (K) to outline the variability across domain regions and surfaces. Our results show that four domains, namely dsrm, Helicase, PAZ and Ribonuclease III, are the main contributors of protein variability in the RNAi machinery across different insect orders. We discuss the potential roles of these domains in regulating RNAi-mediated gene silencing and the role of loop regions in fine-tuning RNAi efficiency. Additionally, we identified several order-specific singularities which indicate that lepidopterans have evolved differently from other insect orders, possibly due to constant coevolution with plant... Mostrar Tudo |
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Palavras-Chave: |
Argonaute; DCR1; Dicer; Drosha; DsRBDs; Evolução da proteína; In silico analysis; Loquacious; Pasha; Protein evolution; R2D2; RIIID II; Sequência de proteínas inteira; Structure-function relationship. |
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Thesagro: |
Controle Genético; Genoma; Inseto; Praga; Proteína. |
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Thesaurus NAL: |
Insect control; Pest control; Protein structure; Proteins. |
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Categoria do assunto: |
--
G Melhoramento Genético |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/230917/1/Dissecting-protein-domain-variability-2021.pdf
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Marc: |
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100 1 $aARRAES, F. B. M.
245 $aDissecting protein domain variability in the core rna interference machinery of five insect orders.$h[electronic resource]
260 $c2021
520 $aRNA interference (RNAi)-mediated gene silencing can be used to control specific insect pest populations. Unfortunately, the variable efficiency in the knockdown levels of target genes has narrowed the applicability of this technology to a few species. Here, we examine the current state of knowledge regarding the miRNA (micro RNA) and siRNA (small interfering RNA) pathways in insects and investigate the structural variability at key protein domains of the RNAi machinery. Our goal was to correlate domain variability with mechanisms affecting the gene silencing efficiency. To this end, the protein domains of 168 insect species, encompassing the orders Coleoptera, Diptera, Hemiptera, Hymenoptera, and Lepidoptera, were analysed using our pipeline, which takes advantage of meticulous structure-based sequence alignments. We used phylogenetic inference and the evolutionary rate coefficient (K) to outline the variability across domain regions and surfaces. Our results show that four domains, namely dsrm, Helicase, PAZ and Ribonuclease III, are the main contributors of protein variability in the RNAi machinery across different insect orders. We discuss the potential roles of these domains in regulating RNAi-mediated gene silencing and the role of loop regions in fine-tuning RNAi efficiency. Additionally, we identified several order-specific singularities which indicate that lepidopterans have evolved differently from other insect orders, possibly due to constant coevolution with plants and viruses. In conclusion, our results highlight several variability hotspots that deserve further investigation in order to improve the application of RNAi technology in the control of insect pests.
650 $aInsect control
650 $aPest control
650 $aProtein structure
650 $aProteins
650 $aControle Genético
650 $aGenoma
650 $aInseto
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650 $aProteína
653 $aArgonaute
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653 $aDrosha
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653 $aIn silico analysis
653 $aLoquacious
653 $aPasha
653 $aProtein evolution
653 $aR2D2
653 $aRIIID II
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653 $aStructure-function relationship
700 1 $aMARTINS-DE-SA, D
700 1 $aVASQUEZ, D. D. N.
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773 $tRNA Biology$gv. 18, n. 11, p. 1653-1681, 2021.
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Registro original: |
Embrapa Semiárido (CPATSA) |
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